Hironori Sato, Yuzaburo Inoue, Yusuke Kawashima, Daisuke Nakajima, Masaki Ishikawa, Ryo Konno, Ren Nakamura, Daigo Kato, Kanako Mitsunaga, Takeshi Yamamoto, Akiko Yamaide, Minako Tomiita, Akira Hoshioka, Osamu Ohara, Naoki Shimojo
ACS omega 7(8) 7012-7023 2022年3月1日
In serum proteomics using mass spectrometry, the number of detectable proteins is reduced due to high-abundance proteins, such as albumin. However, recently developed data-independent acquisition mass spectrometry (DIA-MS) proteomics technology has made it possible to remarkably improve the number of proteins in a serum analysis by removing high-abundance proteins. Using this technology, we analyzed sera from patients with systemic juvenile idiopathic arthritis (sJIA), a rare pediatric disease. As a result, we identified 2727 proteins with a wide dynamic range derived from various tissue leakages. We also selected 591 proteins that differed significantly in their active phases. These proteins were involved in many inflammatory processes, and we also identified immunoproteasomes, which were not previously found in serum, suggesting that they may be involved in the pathogenesis of sJIA. A detailed high-depth DIA-MS proteomic analysis of serum may be useful for understanding the pathogenesis of sJIA and may provide clues for the development of new biomarkers.